Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

NB-4

Primary Tissue

Blood

Site of Extraction

Bone Marrow

Tissue Diagnosis

Leukemia

Sample

source_name

NB4

biomaterial_provider

Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

cell

NB4

cell organism

Human

cell description

acute promyelocytic leukemia cell line. (PMID: 1995093)

cell karyotype

cancer

cell sex

U

replicate

2

Sequenced DNA Library

library_name

GSM736529: Stam_NB4_2

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

43345742

Reads aligned (%)

95.4

Duplicates removed (%)

26.1

Number of peaks

74363 (qval < 1E-05)

hg19

Number of total reads

43345742

Reads aligned (%)

94.5

Duplicates removed (%)

28.0

Number of peaks

74194 (qval < 1E-05)