Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
HPdLF
Tissue
epithelium
Description
periodontal ligament fibroblasts

Attributes by original data submitter

Sample

source_name
HPdLF
biomaterial_provider
Lonza
cell
HPdLF
cell organism
Human
cell description
Normal Human Periodontal Ligament Fibroblasts
cell sex
M
replicate
2

Sequenced DNA Library

library_name
GSM736528: Stam_HPdLF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
30057042
Reads aligned (%)
97.2
Duplicates removed (%)
34.7
Number of peaks
86068 (qval < 1E-05)

hg19

Number of total reads
30057042
Reads aligned (%)
96.5
Duplicates removed (%)
36.4
Number of peaks
85995 (qval < 1E-05)

Base call quality data from DBCLS SRA