SRX069120
GSM736527: Stam HRE 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
HRE
Tissue
epithelium
Lineage
mesoderm
Description
renal epithelial cells

Attributes by original data submitter

Sample

source_name
HRE
biomaterial_provider
Lonza
cell
HRE
cell organism
Human
cell description
Human Renal Epithelial cells (normal)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
replicate
1

Sequenced DNA Library

library_name
GSM736527: Stam_HRE_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33465586
Reads aligned (%)
93.8
Duplicates removed (%)
27.5
Number of peaks
96171 (qval < 1E-05)

hg19

Number of total reads
33465586
Reads aligned (%)
93.3
Duplicates removed (%)
28.5
Number of peaks
95627 (qval < 1E-05)

Base call quality data from DBCLS SRA