Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

GM12865

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12865

biomaterial_provider

GM12865

cell

GM12865

cell organism

Human

cell description

B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

cell karyotype

unknown

cell lineage

mesoderm

cell sex

F

replicate

1

Sequenced DNA Library

library_name

GSM736512: Stam_GM12865_1

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

52116818

Reads aligned (%)

96.4

Duplicates removed (%)

35.3

Number of peaks

76896 (qval < 1E-05)

hg19

Number of total reads

52116818

Reads aligned (%)

88.5

Duplicates removed (%)

31.9

Number of peaks

78972 (qval < 1E-05)