Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat
biomaterial_provider
ATCC
cell
Jurkat
cell organism
Human
cell description
T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype
cancer
cell lineage
mesoderm
cell sex
M
replicate
1

Sequenced DNA Library

library_name
GSM736501: Stam_Jurkat_1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
15464999
Reads aligned (%)
95.9
Duplicates removed (%)
20.5
Number of peaks
45587 (qval < 1E-05)

hg19

Number of total reads
15464999
Reads aligned (%)
94.9
Duplicates removed (%)
22.5
Number of peaks
45542 (qval < 1E-05)

Base call quality data from DBCLS SRA