SRX069084
GSM736491: Stam HVMF 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Placenta
Cell type
HVMF
Tissue
connective
Description
villous mesenchymal fibroblast cells

Attributes by original data submitter

Sample

source_name
HVMF
biomaterial_provider
ScienCell
cell
HVMF
cell organism
Human
cell description
Human Villous Mesenchymal Fibroblast Cells
cell sex
U
replicate
2

Sequenced DNA Library

library_name
GSM736491: Stam_HVMF_2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30062162
Reads aligned (%)
96.8
Duplicates removed (%)
26.1
Number of peaks
92783 (qval < 1E-05)

hg19

Number of total reads
30062162
Reads aligned (%)
96.2
Duplicates removed (%)
27.5
Number of peaks
92664 (qval < 1E-05)

Base call quality data from DBCLS SRA