Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
embryonic stem cells
cell lineage
inner cell mass
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000088
replicate
1,2

Sequenced DNA Library

library_name
GSM733770: Bernstein_H1-hESC_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
30458377
Reads aligned (%)
63.5
Duplicates removed (%)
3.7
Number of peaks
774 (qval < 1E-05)

hg19

Number of total reads
30458377
Reads aligned (%)
62.9
Duplicates removed (%)
4.6
Number of peaks
924 (qval < 1E-05)

Base call quality data from DBCLS SRA