Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
CTCF
Cell type Class
Muscle
Cell type
HSMM

Cell type information


Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by Original Data Submitter


source_name
HSMM
biomaterial_provider
Refer to the protocol documents for differing sources
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
skeletal muscle myoblasts
cell lineage
mesoderm
cell sex
U
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000119
replicate
1,2
softwareversion
ScriptureVPaperR3

Metadata from Sequence Read Archive

Library Description


library_name
GSM733762: Bernstein_HSMM_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
39965662
Reads aligned (%)
64.1
Duplicates removed (%)
21.5
Number of peaks
50281 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA