SRX067501
GSM733750: Bernstein NHDF-Ad Control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
NHDF
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
NHDF-Ad
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
adult dermal fibroblasts
cell karyotype
normal
cell lineage
mesoderm
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH001055
replicate
1,2

Sequenced DNA Library

library_name
GSM733750: Bernstein_NHDF-Ad_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44424912
Reads aligned (%)
77.7
Duplicates removed (%)
38.3
Number of peaks
1053 (qval < 1E-05)

hg19

Number of total reads
44424912
Reads aligned (%)
77.1
Duplicates removed (%)
40.0
Number of peaks
1215 (qval < 1E-05)

Base call quality data from DBCLS SRA