SRX067500
GSM733749: Bernstein HUVEC Pol2(b)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
umbilical vein endothelial cells
antibody antibodydescription
mouse monoclonal, clone CTD4H8. Antibody Target: POL2B
antibody targetdescription
RNA polymerase II. Is responsible for RNA transcription. It is generally enriched at 5' gene ends, probably due to higher rate of occupancy associated with transition from initiation to elongation.
antibody vendorname
Covance
antibody vendorid
MMS-128P
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000060
labversion
Illumina_GA2e and Illumina_GA2x
replicate
1,3,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733749: Bernstein_HUVEC_Pol2(b)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42652161
Reads aligned (%)
57.0
Duplicates removed (%)
25.2
Number of peaks
3548 (qval < 1E-05)

hg19

Number of total reads
42652161
Reads aligned (%)
56.5
Duplicates removed (%)
26.2
Number of peaks
3494 (qval < 1E-05)

Base call quality data from DBCLS SRA