SRX067483
GSM733732: Bernstein HepG2 Control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
biomaterial_type
immortalized cell line
line
HepG2
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
hepatocellular carcinoma
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000084
replicate
1,2

Sequenced DNA Library

library_name
GSM733732: Bernstein_HepG2_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14567591
Reads aligned (%)
89.9
Duplicates removed (%)
4.5
Number of peaks
543 (qval < 1E-05)

hg19

Number of total reads
14567591
Reads aligned (%)
88.8
Duplicates removed (%)
5.5
Number of peaks
727 (qval < 1E-05)

Base call quality data from DBCLS SRA