SRX067474
GSM733723: Bernstein NHLF H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
NHLF
biomaterial_provider
Lonza
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
lung fibroblasts
cell karyotype
normal
cell lineage
endoderm
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
1)abcam; 2)Millipore
antibody vendorid
ab8580; 07-473
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000105
replicate
1,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733723: Bernstein_NHLF_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42673332
Reads aligned (%)
81.1
Duplicates removed (%)
8.3
Number of peaks
28864 (qval < 1E-05)

hg19

Number of total reads
42673332
Reads aligned (%)
80.4
Duplicates removed (%)
9.7
Number of peaks
28845 (qval < 1E-05)

Base call quality data from DBCLS SRA