SRX067441
GSM733690: Bernstein HUVEC H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
donor_id
ENCDO000AAS
biomaterial_type
primary cell
cell_type
endothelial cell of umbilical vein
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
umbilical vein endothelial cells
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody
H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
abcam
antibody vendorid
ab8895
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000060
labversion
Illumina_GA2e and Illumina_GA2x
replicate
1,3,2
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM733690: Bernstein_HUVEC_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53615663
Reads aligned (%)
57.1
Duplicates removed (%)
9.7
Number of peaks
65830 (qval < 1E-05)

hg19

Number of total reads
53615663
Reads aligned (%)
56.8
Duplicates removed (%)
10.0
Number of peaks
65559 (qval < 1E-05)

Base call quality data from DBCLS SRA