Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Broad

lab description

Bernstein - Broad Institute

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

antibody antibodydescription

rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

antibody targetdescription

Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

antibody vendorname

abcam

antibody vendorid

ab8898

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000037

replicate

1,3,2

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM733664: Bernstein_GM12878_H3K9me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

57324614

Reads aligned (%)

83.6

Duplicates removed (%)

11.3

Number of peaks

2433 (qval < 1E-05)

hg19

Number of total reads

57324614

Reads aligned (%)

82.1

Duplicates removed (%)

14.4

Number of peaks

2119 (qval < 1E-05)