Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
HSMM
biomaterial_provider
Refer to the protocol documents for differing sources
lab
Broad
lab description
Bernstein - Broad Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell organism
human
cell description
skeletal muscle myoblasts
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000119
replicate
1,2

Sequenced DNA Library

library_name
GSM733663: Bernstein_HSMM_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
34001366
Reads aligned (%)
71.0
Duplicates removed (%)
13.3
Number of peaks
893 (qval < 1E-05)

hg19

Number of total reads
34001366
Reads aligned (%)
70.2
Duplicates removed (%)
14.8
Number of peaks
1179 (qval < 1E-05)

Base call quality data from DBCLS SRA