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BigWig
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For mm9
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Heart
ATCC
MeSH
RIKEN BRC
SRX066550
GSM734429: whole heart input 3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.
Attributes by original data submitter
Sample
source_name
whole heart
strain
CD1
tissue
whole heart
age
E9.5
chip antibody
none
Sequenced DNA Library
library_name
GSM734429: whole heart input 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
31068764
Reads aligned (%)
97.4
Duplicates removed (%)
10.9
Number of peaks
639 (qval < 1E-05)
mm9
Number of total reads
31068764
Reads aligned (%)
97.2
Duplicates removed (%)
10.9
Number of peaks
745 (qval < 1E-05)
Base call quality data from
DBCLS SRA