Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Larvae
Cell type
L3
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_NHR-28_Input_L3 extraction1_seq1 channel_1
strain
OP317(official name : OP317 genotype : unc119(ed3); wgIs317(nhr-28::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The NHR-28::EGFP fusion protein is expressed in the correct nhr-28 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-28 transcription factor. made_by : R Waterston )
developmental stage
L3
genotype
unc119(ed3);wgIs317(nhr-28::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM729388: Snyder_NHR-28_Input_L3 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
5081071
Reads aligned (%)
86.3
Duplicates removed (%)
4.5
Number of peaks
384 (qval < 1E-05)

ce10

Number of total reads
5081071
Reads aligned (%)
86.3
Duplicates removed (%)
4.5
Number of peaks
382 (qval < 1E-05)

Base call quality data from DBCLS SRA