Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
ceh-82
Cell type Class
Larvae
Cell type
L3

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_F45C12.2_GFP_L3_rep1 extraction3_seq3 channel_1
strain
OP212(official name : OP212 genotype : unc119(ed3); wgIs212(F45C12.2:TY1 EGFP FLAG; unc119) outcross : 3 transgene : F45C12.2 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The F45C12.2::EGFP fusion protein is expressed in the correct F45C12.2 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the F45C12.2 transcription factor. made_by : Mihail Sarov )
developmental stage
L3
genotype
unc119(ed3);wgIs212(F45C12.2:TY1 EGFP FLAG;unc119)
Sex
hermaphrodite
transgene
F45C12.2

Metadata from Sequence Read Archive

Library Description


library_name
GSM729366: Snyder_F45C12.2_GFP_L3_rep1 extraction3_seq3 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
7187808
Reads aligned (%)
33.5
Duplicates removed (%)
9.3
Number of peaks
874 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA