Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
ztf-4
Cell type Class
Larvae
Cell type
L3

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_ZTF-4_GFP_L3_rep1 extraction3_seq3 channel_1
strain
OP322(official name : ZTF-4 genotype : unc119(ed3);wgIs322(ztf-4::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The spatio-temporal expression pattern of ZTF-4::EGFP fusion protein was examined through in vivo microscopy. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ZTF-4 transcription factor. made_by : Bob Waterston's lab from UW )
developmental stage
L3
genotype
unc119(ed3);wgIs322(ztf-4::TY1 EGFP FLAG;unc119)
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM729310: Snyder_ZTF-4_GFP_L3_rep1 extraction3_seq3 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
5310923
Reads aligned (%)
21.4
Duplicates removed (%)
5.5
Number of peaks
314 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA