Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_W03F9.2_Input_YA extraction2_seq2 channel_1
strain
OP215(official name : OP215 genotype : unc119(ed3); wgIs215(W03F9.2::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The W03F9.2::EGFP fusion protein is mainly expressed in germline cells. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the W03F9.2 transcription factor. made_by : Tony Hyman's lab from MPI-CBG )
developmental stage
L4-Young Adult
genotype
unc119(ed3);wgIs215(W03F9.2::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM729305: Snyder_W03F9.2_Input_YA extraction2_seq2 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
6409191
Reads aligned (%)
99.2
Duplicates removed (%)
11.0
Number of peaks
471 (qval < 1E-05)

ce10

Number of total reads
6409191
Reads aligned (%)
99.2
Duplicates removed (%)
11.0
Number of peaks
472 (qval < 1E-05)

Base call quality data from DBCLS SRA