Curated Sample Data


Genome
ce10
Antigen Class
Input control
Antigen
Input control
Cell type Class
Adult
Cell type
Young adult

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_W03F9.2_Input_YA extraction2_seq2 channel_1
strain
OP215(official name : OP215 genotype : unc119(ed3);wgIs215(W03F9.2::TY1 EGFP FLAG;unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The W03F9.2::EGFP fusion protein is mainly expressed in germline cells. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the W03F9.2 transcription factor. made_by : Tony Hyman's lab from MPI-CBG )
developmental stage
L4-Young Adult
genotype
unc119(ed3);wgIs215(W03F9.2::TY1 EGFP FLAG;unc119)
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM729305: Snyder_W03F9.2_Input_YA extraction2_seq2 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
6409191
Reads aligned (%)
99.2
Duplicates removed (%)
11.0
Number of peaks
468 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA