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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX065551
GSM700363: Input 2 HEK293 stables ChIP-seq rep1 lane6
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
Transformed embryonic kidney cell line
cell line
HEK293
genotype/variation
stably expressing FLAG-KAP1 HP1-binding domain mutant
harvest date
11/23/09
chip antibody
N/A
Sequenced DNA Library
library_name
GSM700363: Input_2_HEK293 stables_ChIP-seq_rep1_lane6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21102735
Reads aligned (%)
76.1
Duplicates removed (%)
7.0
Number of peaks
340 (qval < 1E-05)
hg19
Number of total reads
21102735
Reads aligned (%)
75.7
Duplicates removed (%)
7.6
Number of peaks
527 (qval < 1E-05)
Base call quality data from
DBCLS SRA