SRX065550
GSM700362: Input 1 HEK293 stables ChIP-seq rep1 lane6

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Transformed embryonic kidney cell line
cell line
HEK293
genotype/variation
stably expressing FLAG-KAP1 wild type
harvest date
11/01/09
chip antibody
N/A

Sequenced DNA Library

library_name
GSM700362: Input_1_HEK293 stables_ChIP-seq_rep1_lane6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30844824
Reads aligned (%)
67.5
Duplicates removed (%)
3.5
Number of peaks
484 (qval < 1E-05)

hg19

Number of total reads
30844824
Reads aligned (%)
66.8
Duplicates removed (%)
4.4
Number of peaks
725 (qval < 1E-05)

Base call quality data from DBCLS SRA