SRX065547
GSM700359: Endogenous KAP1 HEK293 cells ChIP-seq rep1 lane4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM28

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Untransformed embryonic kidney cell line
cell line
HEK293
genotype/variation
original cells (non-transformed) from ATCC
harvest date
2009-09-10
chip antibody
rabbit anti-KAP1 (Abcam, catalog # ab10483)

Sequenced DNA Library

library_name
GSM700359: Endogenous KAP1_HEK293 cells_ChIP-seq_rep1_lane4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
48358172
Reads aligned (%)
77.8
Duplicates removed (%)
4.5
Number of peaks
19789 (qval < 1E-05)

hg38

Number of total reads
48358172
Reads aligned (%)
78.3
Duplicates removed (%)
3.4
Number of peaks
19383 (qval < 1E-05)

Base call quality data from DBCLS SRA