Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Runx1(Venus/+) ES cell line, IgG control
cell line
Runx1(Venus/+) ES cell line
cell type
differentiated ES cells
days of differentiation
6
cell subpopulation
unsorted
chip antibody
IgG

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
13340567
Reads aligned (%)
90.8
Duplicates removed (%)
11.7
Number of peaks
449 (qval < 1E-05)

mm9

Number of total reads
13340567
Reads aligned (%)
90.6
Duplicates removed (%)
11.9
Number of peaks
484 (qval < 1E-05)

Base call quality data from DBCLS SRA