SRX064497
GSM727604: Endoderm input DNA pool (for histone modifications)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
endoderm precursor cells
cell line
H9
cell type
ESC-derived endoderm
passages
40-50
chip antibody
none

Sequenced DNA Library

library_name
GSM727604: Endoderm input DNA pool (for histone modifications)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14878571
Reads aligned (%)
98.0
Duplicates removed (%)
1.6
Number of peaks
635 (qval < 1E-05)

hg19

Number of total reads
14878571
Reads aligned (%)
97.4
Duplicates removed (%)
2.4
Number of peaks
846 (qval < 1E-05)

Base call quality data from DBCLS SRA