SRX064495
GSM727596: Endoderm H3K4me3 ChIP-Seq pool

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
endoderm precursor cells
cell line
H9
cell type
ESC-derived endoderm
passages
40-50
chip antibody
H3K4me3, rabbit polyclonal
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM727596: Endoderm H3K4me3 ChIP-Seq pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13797614
Reads aligned (%)
97.5
Duplicates removed (%)
4.7
Number of peaks
25416 (qval < 1E-05)

hg19

Number of total reads
13797614
Reads aligned (%)
96.9
Duplicates removed (%)
5.4
Number of peaks
25390 (qval < 1E-05)

Base call quality data from DBCLS SRA