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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXH1
wikigenes
PDBj
CellType: hESC derived mesendodermal cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX064493
GSM727589: Endoderm FOXH1 ChIP-Seq pool
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXH1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA
Attributes by original data submitter
Sample
source_name
endoderm precursor cells
cell line
H9
cell type
ESC-derived endoderm
passages
40-50
chip antibody
FOXH1, sheep polyclonal
chip antibody manufacturer
R&D Systems
Sequenced DNA Library
library_name
GSM727589: Endoderm FOXH1 ChIP-Seq pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15451379
Reads aligned (%)
92.5
Duplicates removed (%)
3.6
Number of peaks
27135 (qval < 1E-05)
hg19
Number of total reads
15451379
Reads aligned (%)
92.1
Duplicates removed (%)
4.2
Number of peaks
27079 (qval < 1E-05)
Base call quality data from
DBCLS SRA