Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
endoderm precursor cells
cell line
H9
cell type
ESC-derived endoderm
passages
40-50
chip antibody
SMAD4, goat polyclonal
chip antibody manufacturer
R&D Systems

Sequenced DNA Library

library_name
GSM727586: Endoderm SMAD4 ChIP-Seq rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
8802672
Reads aligned (%)
92.5
Duplicates removed (%)
1.8
Number of peaks
5077 (qval < 1E-05)

hg38

Number of total reads
8802672
Reads aligned (%)
93.5
Duplicates removed (%)
1.2
Number of peaks
4886 (qval < 1E-05)

Base call quality data from DBCLS SRA