SRX064491
GSM727585: Endoderm SMAD3 ChIP-Seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
endoderm precursor cells
cell line
H9
cell type
ESC-derived endoderm
passages
40-50
chip antibody
SMAD3, rabbit polyclonal
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM727585: Endoderm SMAD3 ChIP-Seq rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8976788
Reads aligned (%)
93.4
Duplicates removed (%)
1.7
Number of peaks
2708 (qval < 1E-05)

hg19

Number of total reads
8976788
Reads aligned (%)
92.8
Duplicates removed (%)
2.3
Number of peaks
2779 (qval < 1E-05)

Base call quality data from DBCLS SRA