SRX064488
GSM727580: hESC input DNA pool (for histone modifications)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
none

Sequenced DNA Library

library_name
GSM727580: hESC input DNA pool (for histone modifications)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24673076
Reads aligned (%)
67.1
Duplicates removed (%)
3.2
Number of peaks
1284 (qval < 1E-05)

hg19

Number of total reads
24673076
Reads aligned (%)
66.0
Duplicates removed (%)
5.3
Number of peaks
1628 (qval < 1E-05)

Base call quality data from DBCLS SRA