Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
none

Sequenced DNA Library

library_name
GSM727569: hESC input DNA pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
37799295
Reads aligned (%)
98.2
Duplicates removed (%)
2.2
Number of peaks
1354 (qval < 1E-05)

hg19

Number of total reads
37799295
Reads aligned (%)
97.6
Duplicates removed (%)
3.2
Number of peaks
1563 (qval < 1E-05)

Base call quality data from DBCLS SRA