Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXH1
wikigenes
PDBj
CellType: hESC H9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX064484
GSM727564: hESC FOXH1 ChIP-Seq pool
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXH1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA
Attributes by original data submitter
Sample
source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
FOXH1, sheep polyclonal
chip antibody manufacturer
R&D Systems
Sequenced DNA Library
library_name
GSM727564: hESC FOXH1 ChIP-Seq pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
15463890
Reads aligned (%)
92.2
Duplicates removed (%)
3.1
Number of peaks
8564 (qval < 1E-05)
hg38
Number of total reads
15463890
Reads aligned (%)
93.4
Duplicates removed (%)
2.3
Number of peaks
8164 (qval < 1E-05)
Base call quality data from
DBCLS SRA