Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
SMAD4, goat polyclonal
chip antibody manufacturer
R&D Systems

Sequenced DNA Library

library_name
GSM727561: hESC SMAD4 ChIP-Seq rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
13903578
Reads aligned (%)
89.6
Duplicates removed (%)
3.3
Number of peaks
3002 (qval < 1E-05)

hg38

Number of total reads
13903578
Reads aligned (%)
90.5
Duplicates removed (%)
2.7
Number of peaks
2981 (qval < 1E-05)

Base call quality data from DBCLS SRA