Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
SMAD3, rabbit polyclonal
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM727559: hESC SMAD3 ChIP-Seq rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
10705399
Reads aligned (%)
92.1
Duplicates removed (%)
1.7
Number of peaks
2473 (qval < 1E-05)

hg38

Number of total reads
10705399
Reads aligned (%)
93.0
Duplicates removed (%)
1.1
Number of peaks
2358 (qval < 1E-05)

Base call quality data from DBCLS SRA