SRX064480
GSM727557: hESC SMAD2/3 A ChIP-Seq pool

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
H9
cell type
embryonic stem cells
passages
40-50
chip antibody
SMAD2/3, rabbit polyclonal
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM727557: hESC SMAD2/3 A ChIP-Seq pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15270637
Reads aligned (%)
95.9
Duplicates removed (%)
1.7
Number of peaks
3797 (qval < 1E-05)

hg19

Number of total reads
15270637
Reads aligned (%)
95.4
Duplicates removed (%)
2.6
Number of peaks
3782 (qval < 1E-05)

Base call quality data from DBCLS SRA