SRX063933
GSM727005: TFIIH ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ercc3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
Primary T-cells
strain
C57BL/6
tissue
thymus
cell type
T cells
developmental stage
CD4+/CD8+ double-positive (DP)
antibody vendor
Santa Cruz
antibody catalog number
sc-293x
antibody lot number
E0610

Sequenced DNA Library

library_name
GSM727005: TFIIH_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38611368
Reads aligned (%)
89.0
Duplicates removed (%)
52.9
Number of peaks
1268 (qval < 1E-05)

mm9

Number of total reads
38611368
Reads aligned (%)
88.8
Duplicates removed (%)
53.0
Number of peaks
985 (qval < 1E-05)

Base call quality data from DBCLS SRA