SRX063929
GSM727001: TFIIA ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gtf2a2

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
Primary T-cells
strain
C57BL/6
tissue
thymus
cell type
T cells
developmental stage
CD4+/CD8+ double-positive (DP)
antibody vendor
Santa Cruz
antibody catalog number
sc-25365x
antibody lot number
A2304

Sequenced DNA Library

library_name
GSM727001: TFIIA_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41831941
Reads aligned (%)
85.9
Duplicates removed (%)
63.8
Number of peaks
864 (qval < 1E-05)

mm9

Number of total reads
41831941
Reads aligned (%)
85.7
Duplicates removed (%)
64.0
Number of peaks
957 (qval < 1E-05)

Base call quality data from DBCLS SRA