SRX063922
GSM726987: K562-ERG ERG(SA706 Diagenode) 72hrsdox

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
72 hrs dox
antibody
AE (A706)
antibody vendor
n/a (commercialization pending manuscript publication)
antibody catalog number
n/a (commercialization pending manuscript publication)
antibody lot/batch number
n/a (commercialization pending manuscript publication)

Sequenced DNA Library

library_name
GSM726987: K562-ERG_ERG(SA706_Diagenode)_72hrsdox
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
44327600
Reads aligned (%)
72.8
Duplicates removed (%)
50.3
Number of peaks
26701 (qval < 1E-05)

hg38

Number of total reads
44327600
Reads aligned (%)
73.2
Duplicates removed (%)
49.3
Number of peaks
26870 (qval < 1E-05)

Base call quality data from DBCLS SRA