Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 (cancer)
cell type
hematopoietic cell
disease state
cancer
treatment
no
antibody
AE (A706)
antibody vendor
n/a (commercialization pending manuscript publication)
antibody catalog number
n/a (commercialization pending manuscript publication)
antibody lot/batch number
n/a (commercialization pending manuscript publication)

Sequenced DNA Library

library_name
GSM726983: MCF7_ERG(A706_Diagenode)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
37754070
Reads aligned (%)
14.7
Duplicates removed (%)
64.6
Number of peaks
23394 (qval < 1E-05)

hg38

Number of total reads
37754070
Reads aligned (%)
15.1
Duplicates removed (%)
63.9
Number of peaks
23500 (qval < 1E-05)

Base call quality data from DBCLS SRA