SRX063292
GSM721532: TKO2 input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
TKO2_input
cell line
TKO2
tissue type
blood
genotype/variation
t(4;14)-associated NSD2 allele knocked-out
gender
female
chip antibody
N/A
chip antibody vendor
N/A

Sequenced DNA Library

library_name
GSM721532: TKO2_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8836450
Reads aligned (%)
97.0
Duplicates removed (%)
2.5
Number of peaks
261 (qval < 1E-05)

hg19

Number of total reads
8836450
Reads aligned (%)
96.2
Duplicates removed (%)
3.6
Number of peaks
511 (qval < 1E-05)

Base call quality data from DBCLS SRA