SRX062984
GSM723002: RenLab-H3K4me3-spleen (Illumina HiSeq 2000)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Mouse spleen
strain
C57BL/6
chip antibody
H3K4me3
chip antibody details
Millipore, 05-745

Sequenced DNA Library

library_name
GSM723002: RenLab-H3K4me3-spleen (Illumina HiSeq 2000)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15231356
Reads aligned (%)
79.3
Duplicates removed (%)
18.7
Number of peaks
28327 (qval < 1E-05)

mm9

Number of total reads
15231356
Reads aligned (%)
79.2
Duplicates removed (%)
18.8
Number of peaks
28415 (qval < 1E-05)

Base call quality data from DBCLS SRA