SRX062982
GSM722994: RenLab-Input-spleen (Illumina GA IIx)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Mouse spleen
strain
C57BL/6
chip antibody
none (Input)
chip antibody details
None

Sequenced DNA Library

library_name
GSM722994: RenLab-Input-spleen (Illumina GA IIx)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31561765
Reads aligned (%)
85.8
Duplicates removed (%)
12.2
Number of peaks
737 (qval < 1E-05)

mm9

Number of total reads
31561765
Reads aligned (%)
85.5
Duplicates removed (%)
12.2
Number of peaks
862 (qval < 1E-05)

Base call quality data from DBCLS SRA