SRX062979
GSM722991: RenLab-H3K4me1-spleen (Illumina GA IIx)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Mouse spleen
strain
C57BL/6
chip antibody
H3K4me1
chip antibody details
Abcam, ab8895

Sequenced DNA Library

library_name
GSM722991: RenLab-H3K4me1-spleen (Illumina GA IIx)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12699655
Reads aligned (%)
76.6
Duplicates removed (%)
19.5
Number of peaks
436 (qval < 1E-05)

mm9

Number of total reads
12699655
Reads aligned (%)
76.3
Duplicates removed (%)
19.8
Number of peaks
503 (qval < 1E-05)

Base call quality data from DBCLS SRA