SRX062961
GSM722699: RenLab-H3K4me1-kidney

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

source_name
Mouse kidney
strain
C57BL/6
chip antibody
H3K4me1
chip antibody details
Abcam, ab8895

Sequenced DNA Library

library_name
GSM722699: RenLab-H3K4me1-kidney
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33458503
Reads aligned (%)
75.5
Duplicates removed (%)
2.9
Number of peaks
12739 (qval < 1E-05)

mm9

Number of total reads
33458503
Reads aligned (%)
75.4
Duplicates removed (%)
3.0
Number of peaks
12812 (qval < 1E-05)

Base call quality data from DBCLS SRA