ChIP-Atlas: SRX062943

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Neural
Cell type: Brain cortex
NA: NA

Attributes by original data submitter

Sample

source_name: Mouse cortex
strain: C57BL/6
chip antibody: none (Input)
chip antibody details: None

Sequenced DNA Library

library_name: GSM722635: RenLab-Input-cortex
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 43329511
Reads aligned (%): 61.2
Duplicates removed (%): 8.3
Number of peaks: 4033 (qval < 1E-05)

mm9

Number of total reads: 43329511
Reads aligned (%): 61.1
Duplicates removed (%): 8.3
Number of peaks: 4074 (qval < 1E-05)

Base call quality data from DBCLS SRA