SRX062422
GSM723173: HAEC-LG-H3Ac-R3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9K14ac

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
H3K9/K14ac_ChIPSeq
cell type
primary Human Aortic Endothelial cells (HAEC)
passages
3 to 6
antibody
H3K9/K14ac (Upstate 06-599)
treatment
LG (repeat 3)

Sequenced DNA Library

library_name
GSM723173: HAEC-LG-H3Ac-R3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23057605
Reads aligned (%)
98.0
Duplicates removed (%)
58.0
Number of peaks
217 (qval < 1E-05)

hg19

Number of total reads
23057605
Reads aligned (%)
97.1
Duplicates removed (%)
59.9
Number of peaks
276 (qval < 1E-05)

Base call quality data from DBCLS SRA