SRX062357
GSM699632: NKX3-1 ChIP sequencing in Et (ethanol) treated LNCaP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX3-1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP prostate cancer cells
cell line
LNCaP androgen-dependent prostate cancer cell line
agent
ethanol
chip antibody
NKX3-1 antibody
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM699632: NKX3-1 ChIP sequencing in Et (ethanol) treated LNCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
13959856
Reads aligned (%)
86.3
Duplicates removed (%)
5.0
Number of peaks
668 (qval < 1E-05)

hg38

Number of total reads
13959856
Reads aligned (%)
88.3
Duplicates removed (%)
3.7
Number of peaks
543 (qval < 1E-05)

Base call quality data from DBCLS SRA