SRX062344
GSM722713: DNasel HS Kasumi-1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1
cell type
Kasumi-1
target
DNasel HS
antibody
NA

Sequenced DNA Library

library_name
GSM722713: DNasel_HS_Kasumi-1
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38201448
Reads aligned (%)
95.7
Duplicates removed (%)
29.9
Number of peaks
14229 (qval < 1E-05)

hg19

Number of total reads
38201448
Reads aligned (%)
95.0
Duplicates removed (%)
31.1
Number of peaks
13913 (qval < 1E-05)

Base call quality data from DBCLS SRA