SRX062342
GSM722711: H3K9Ac siMM ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 transfection with mismatch siRNA
cell type
Kasumi-1
target
H3K9Ac
antibody
ab4441 (lot number 939894)

Sequenced DNA Library

library_name
GSM722711: H3K9Ac_siMM_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29027926
Reads aligned (%)
88.4
Duplicates removed (%)
5.2
Number of peaks
31049 (qval < 1E-05)

hg19

Number of total reads
29027926
Reads aligned (%)
87.3
Duplicates removed (%)
5.3
Number of peaks
30897 (qval < 1E-05)

Base call quality data from DBCLS SRA