SRX062341
GSM722710: POLII siRE ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 transfection with RUNX1/ETO siRNA
cell type
Kasumi-1
target
RNA Polymerase II
antibody
ab5095

Sequenced DNA Library

library_name
GSM722710: POLII_siRE_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18009557
Reads aligned (%)
97.7
Duplicates removed (%)
2.8
Number of peaks
13041 (qval < 1E-05)

hg19

Number of total reads
18009557
Reads aligned (%)
97.1
Duplicates removed (%)
3.5
Number of peaks
13151 (qval < 1E-05)

Base call quality data from DBCLS SRA